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***  OXIDOREDUCTASE 07-APR-18 6G83  ***

Normal Mode Analysis for ID 20122618531975650

The following table indicates for every normal mode its frequency (black, normalized relative to the lowest mode frequency) and its collectivity (magenta). If a second structure was submitted, the cummulative overlap between the normal modes and the conformational change is computed (red). The corresponding amplitude (dq) is then also given (green). Click on the mode link to obtain a visualization of the mean square displacement <R2> of the C-alpha atoms associated to each mode.

WARNING: there are 1 low-collectivity modes among your first 5 modes (see below)! The degree of collectivity indicates the fraction of residues that are significantly affected by a given mode. While low-frequency modes are expected to have collective character, computed ones sometimes happen to be localized. In such cases, they correspond to motions of some extended parts of the system, as often observed in crystallographic protein structures for N- and C-termini.

[HELP on collectivity] [HELP on overlap]

<R2> frequency collectivity
mode 7 1.00 0.6485
mode 8 1.13 0.7171
mode 9 1.27 0.7730
mode 10 2.10 0.0315
mode 11 2.95 0.4137
mode 12 3.44 0.8719
mode 13 3.76 0.4116
mode 14 3.93 0.3326
mode 15 4.49 0.2388
mode 16 4.70 0.2351
mode 17 5.43 0.4911
mode 18 5.69 0.4151
mode 19 5.95 0.0192
mode 20 6.17 0.3566
mode 21 6.52 0.4111
mode 22 6.92 0.2124
mode 23 6.96 0.3201
mode 24 7.36 0.4532
mode 25 7.46 0.4649
mode 26 8.17 0.1855
mode 27 8.26 0.6714
mode 28 8.34 0.3207
mode 29 8.51 0.6183
mode 30 8.77 0.7451
mode 31 9.01 0.6841
mode 32 9.36 0.4485
mode 33 9.55 0.2950
mode 34 9.61 0.1518
mode 35 9.83 0.3230
mode 36 10.14 0.2740
mode 37 10.23 0.3529
mode 38 10.51 0.2047
mode 39 10.76 0.4457
mode 40 10.89 0.1689
mode 41 10.97 0.4115
mode 42 10.97 0.3752
mode 43 11.15 0.3775
mode 44 11.22 0.4622
mode 45 11.34 0.4417
mode 46 11.69 0.2500
mode 47 11.80 0.5412
mode 48 11.93 0.2933
mode 49 12.02 0.3285
mode 50 12.31 0.3378
mode 51 12.53 0.4082
mode 52 12.70 0.2104
mode 53 12.75 0.4263
mode 54 12.85 0.3212
mode 55 13.18 0.2904
mode 56 13.25 0.4345
mode 57 13.34 0.4380
mode 58 13.36 0.5641
mode 59 13.64 0.3716
mode 60 13.75 0.4149
mode 61 13.87 0.3121
mode 62 13.94 0.3399
mode 63 14.11 0.5088
mode 64 14.17 0.2847
mode 65 14.33 0.4912
mode 66 14.40 0.3910
mode 67 14.54 0.3946
mode 68 14.56 0.4273
mode 69 14.58 0.4768
mode 70 14.67 0.4413
mode 71 14.78 0.3932
mode 72 14.94 0.4942
mode 73 15.01 0.4115
mode 74 15.13 0.3970
mode 75 15.18 0.3816
mode 76 15.27 0.5095
mode 77 15.44 0.3813
mode 78 15.47 0.4041
mode 79 15.59 0.4583
mode 80 15.73 0.5787
mode 81 15.91 0.4012
mode 82 15.99 0.3844
mode 83 16.02 0.5173
mode 84 16.06 0.4071
mode 85 16.14 0.4167
mode 86 16.22 0.3314
mode 87 16.39 0.5463
mode 88 16.54 0.4058
mode 89 16.57 0.4566
mode 90 16.72 0.3901
mode 91 16.80 0.2650
mode 92 16.82 0.4292
mode 93 16.90 0.3412
mode 94 16.97 0.3383
mode 95 17.08 0.2921
mode 96 17.19 0.4575
mode 97 17.31 0.3345
mode 98 17.38 0.5579
mode 99 17.53 0.4634
mode 100 17.62 0.3252
mode 101 17.71 0.4228
mode 102 17.80 0.4726
mode 103 17.82 0.4655
mode 104 17.85 0.5079
mode 105 17.96 0.4697
mode 106 17.98 0.4893

If you find results from this site helpful for your research, please cite one of our papers:

elNémo is maintained by Yves-Henri Sanejouand.
It was developed by Karsten Suhre.
Between 2003 and 2014, it was hosted by IGS (Marseille).
Last modification: October 18th, 2018.