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***  pavithra  ***

Normal Mode Analysis for ID 2012220440442120

The following table indicates for every normal mode its frequency (black, normalized relative to the lowest mode frequency) and its collectivity (magenta). If a second structure was submitted, the cummulative overlap between the normal modes and the conformational change is computed (red). The corresponding amplitude (dq) is then also given (green). Click on the mode link to obtain a visualization of the mean square displacement <R2> of the C-alpha atoms associated to each mode.

WARNING: there are 3 low-collectivity modes among your first 5 modes (see below)! The degree of collectivity indicates the fraction of residues that are significantly affected by a given mode. While low-frequency modes are expected to have collective character, computed ones sometimes happen to be localized. In such cases, they correspond to motions of some extended parts of the system, as often observed in crystallographic protein structures for N- and C-termini.

[HELP on collectivity] [HELP on overlap]

<R2> frequency collectivity
mode 7 1.00 0.0835
mode 8 1.11 0.0965
mode 9 1.17 0.0345
mode 10 1.58 0.2300
mode 11 1.66 0.3081
mode 12 1.75 0.0111
mode 13 1.79 0.1736
mode 14 1.79 0.1791
mode 15 1.87 0.0190
mode 16 1.93 0.0403
mode 17 1.96 0.1630
mode 18 2.02 0.0427
mode 19 2.07 0.0781
mode 20 2.08 0.0710
mode 21 2.15 0.1148
mode 22 2.19 0.0240
mode 23 2.23 0.1264
mode 24 2.24 0.3134
mode 25 2.28 0.0250
mode 26 2.31 0.0263
mode 27 2.36 0.1740
mode 28 2.39 0.0737
mode 29 2.45 0.1329
mode 30 2.47 0.0455
mode 31 2.51 0.0401
mode 32 2.52 0.1024
mode 33 2.55 0.0520
mode 34 2.60 0.0288
mode 35 2.62 0.1842
mode 36 2.65 0.0372
mode 37 2.67 0.1128
mode 38 2.71 0.1476
mode 39 2.74 0.1251
mode 40 2.75 0.0281
mode 41 2.77 0.2217
mode 42 2.79 0.2013
mode 43 2.81 0.0656
mode 44 2.83 0.1217
mode 45 2.84 0.0868
mode 46 2.87 0.0180
mode 47 2.89 0.1095
mode 48 2.92 0.0427
mode 49 2.93 0.0985
mode 50 2.97 0.0337
mode 51 2.98 0.0925
mode 52 3.00 0.0667
mode 53 3.03 0.0477
mode 54 3.04 0.1526
mode 55 3.07 0.0180
mode 56 3.07 0.1313
mode 57 3.07 0.1155
mode 58 3.09 0.0096
mode 59 3.10 0.0610
mode 60 3.11 0.0285
mode 61 3.12 0.0098
mode 62 3.14 0.2008
mode 63 3.16 0.1487
mode 64 3.18 0.0611
mode 65 3.19 0.0629
mode 66 3.20 0.0933
mode 67 3.23 0.0663
mode 68 3.25 0.0841
mode 69 3.25 0.0856
mode 70 3.27 0.0292
mode 71 3.28 0.0208
mode 72 3.29 0.0310
mode 73 3.30 0.1503
mode 74 3.30 0.2409
mode 75 3.31 0.0951
mode 76 3.33 0.0910
mode 77 3.34 0.0857
mode 78 3.34 0.0180
mode 79 3.36 0.0456
mode 80 3.36 0.0122
mode 81 3.37 0.0192
mode 82 3.37 0.1175
mode 83 3.39 0.0868
mode 84 3.39 0.0157
mode 85 3.40 0.0187
mode 86 3.40 0.0160
mode 87 3.41 0.1034
mode 88 3.42 0.0886
mode 89 3.43 0.0544
mode 90 3.44 0.0845
mode 91 3.46 0.0538
mode 92 3.46 0.0836
mode 93 3.49 0.0523
mode 94 3.49 0.0236
mode 95 3.50 0.0478
mode 96 3.52 0.0478
mode 97 3.52 0.1136
mode 98 3.54 0.1536
mode 99 3.55 0.0235
mode 100 3.55 0.0400
mode 101 3.56 0.0763
mode 102 3.57 0.0516
mode 103 3.58 0.1472
mode 104 3.60 0.1100
mode 105 3.60 0.0807
mode 106 3.61 0.1195

If you find results from this site helpful for your research, please cite one of our papers:

elNémo is maintained by Yves-Henri Sanejouand.
It was developed by Karsten Suhre.
Between 2003 and 2014, it was hosted by IGS (Marseille).
Last modification: October 18th, 2018.