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***  16_CA_10_173_deal  ***

Normal Mode Analysis for ID 19091023131120292

The following table indicates for every normal mode its frequency (black, normalized relative to the lowest mode frequency) and its collectivity (magenta). If a second structure was submitted, the cummulative overlap between the normal modes and the conformational change is computed (red). The corresponding amplitude (dq) is then also given (green). Click on the mode link to obtain a visualization of the mean square displacement <R2> of the C-alpha atoms associated to each mode.

WARNING: there are 1 low-collectivity modes among your first 5 modes (see below)! The degree of collectivity indicates the fraction of residues that are significantly affected by a given mode. While low-frequency modes are expected to have collective character, computed ones sometimes happen to be localized. In such cases, they correspond to motions of some extended parts of the system, as often observed in crystallographic protein structures for N- and C-termini.

[HELP on collectivity] [HELP on overlap]

<R2> frequency collectivity
mode 7 1.00 0.6282
mode 8 1.16 0.4622
mode 9 1.22 0.4369
mode 10 1.44 0.0922
mode 11 1.62 0.3996
mode 12 1.87 0.1330
mode 13 1.89 0.4153
mode 14 1.99 0.1053
mode 15 2.15 0.3542
mode 16 2.19 0.4888
mode 17 2.25 0.5729
mode 18 2.28 0.5701
mode 19 2.45 0.4545
mode 20 2.61 0.3421
mode 21 2.67 0.4861
mode 22 2.73 0.2820
mode 23 2.83 0.1869
mode 24 2.87 0.5695
mode 25 2.90 0.4957
mode 26 2.97 0.3482
mode 27 2.99 0.4567
mode 28 3.04 0.4436
mode 29 3.14 0.4783
mode 30 3.24 0.6087
mode 31 3.27 0.0838
mode 32 3.31 0.5426
mode 33 3.34 0.6429
mode 34 3.41 0.6134
mode 35 3.43 0.5147
mode 36 3.47 0.6073
mode 37 3.51 0.4756
mode 38 3.62 0.3653
mode 39 3.72 0.5139
mode 40 3.74 0.4203
mode 41 3.81 0.5521
mode 42 3.85 0.6125
mode 43 3.91 0.5065
mode 44 3.96 0.0940
mode 45 4.02 0.5088
mode 46 4.06 0.6238
mode 47 4.14 0.2985
mode 48 4.18 0.4934
mode 49 4.21 0.5087
mode 50 4.28 0.3458
mode 51 4.30 0.5873
mode 52 4.36 0.4859
mode 53 4.42 0.5886
mode 54 4.47 0.4897
mode 55 4.51 0.5885
mode 56 4.57 0.6296
mode 57 4.60 0.5554
mode 58 4.62 0.5572
mode 59 4.66 0.5413
mode 60 4.72 0.4128
mode 61 4.79 0.5103
mode 62 4.83 0.5039
mode 63 4.85 0.5630
mode 64 4.87 0.5210
mode 65 4.87 0.5656
mode 66 4.93 0.4779
mode 67 4.94 0.5189
mode 68 4.98 0.5562
mode 69 5.02 0.4787
mode 70 5.06 0.5058
mode 71 5.10 0.5448
mode 72 5.15 0.5356
mode 73 5.18 0.4925
mode 74 5.21 0.5439
mode 75 5.25 0.4442
mode 76 5.28 0.5159
mode 77 5.32 0.4130
mode 78 5.35 0.5229
mode 79 5.36 0.5596
mode 80 5.40 0.5482
mode 81 5.46 0.5027
mode 82 5.48 0.4418
mode 83 5.50 0.4668
mode 84 5.55 0.3874
mode 85 5.56 0.4908
mode 86 5.61 0.5030
mode 87 5.62 0.5002
mode 88 5.65 0.4815
mode 89 5.69 0.5262
mode 90 5.75 0.5154
mode 91 5.80 0.3773
mode 92 5.82 0.4502
mode 93 5.85 0.4992
mode 94 5.85 0.5326
mode 95 5.89 0.4959
mode 96 5.91 0.5829
mode 97 5.96 0.4852
mode 98 5.99 0.5575
mode 99 6.01 0.4827
mode 100 6.06 0.5367
mode 101 6.07 0.5742
mode 102 6.09 0.4399
mode 103 6.11 0.4993
mode 104 6.13 0.4889
mode 105 6.16 0.4532
mode 106 6.19 0.5760

If you find results from this site helpful for your research, please cite one of our papers:

elNémo is maintained by Yves-Henri Sanejouand.
It was developed by Karsten Suhre.
Between 2003 and 2014, it was hosted by IGS (Marseille).
Last modification: October 18th, 2018.